Supersonic monkeys, vampires, talking fishmen, and all sorts of different supernatural monsters living alongside humans—this has been part of daily life in Hellsalem's Lot, formerly known as New York City, for some time now. When a gateway between Earth and the Beyond opened three years ago, New Yorkers and creatures from the other dimension alike were trapped in an impenetrable bubble and were forced to live together. Libra is a secret organization composed of eccentrics and superhumans, tasked with keeping order in the city and making sure that chaos doesn't spread to the rest of the world. Pursuing photography as a hobby, Leonardo Watch is living a normal life with his parents and sister. But when he obtains the "All-seeing Eyes of the Gods" at the expense of his sister's eyesight, he goes to Hellsalem's Lot in order to help her by finding answers about the mysterious powers he received. He soon runs into Libra, and when Leo unexpectedly joins their ranks, he gets more than what he bargained for. Kekkai Sensen follows Leo's misadventures in the strangest place on Earth with his equally strange comrades—as the ordinary boy unwittingly sees his life take a turn for the extraordinary.

While most young girls make an effort to show off their feminine charms, Futaba Yoshioka deliberately behaves like she wants to repel anyone who might be attracted to her. Ostracized by her female classmates in middle school for being a little too popular with the boys, she desperately strives to avoid a similar situation in high school by being unnecessarily noisy and graceless. Nevertheless, scattered among Futaba's unpleasant memories are the treasured moments with the boy she had a crush on, Kou Tanaka. Unfortunately, that spell abruptly ended on a sour note when he suddenly stopped attending school and never came back. When Futaba finds out that Kou has returned—with a different last name this time—she can already feel the butterflies in her stomach. However, Kou Mabuchi is not the warm boy that she remembers from her days in middle school; he is now taller, more charismatic and withdrawn—making him far less approachable. Futaba believes that if she returns to her former self, Kou will begin to take notice of her again. But is she prepared to sacrifice her bubble of normalcy and risk losing her friends in the process?

As humanity's war with the Neuroi—a mysterious, hostile alien race possessing weapons of unparalleled power—continues being fought across Europe and Africa, a new fighter squadron is formed. The 502nd Joint Fighter Wing, also known as the Brave Witches, operates on the eastern front, scouring the icy vastness of Orussia in search of alien invaders. However, one of the Brave Witches' members suffers severe injuries on her way to the squadron's headquarters, rendering her unable to participate in any operations. As a result, her sister, Hikari Karibuchi, volunteers to take her place. Though not possessing any special abilities or significant magical powers, she is determined to live up to the expectations of her new comrades and prove herself worthy of the name of a Witch.

For weeks, Atsushi Nakajima's orphanage has been plagued by a mystical tiger that only he seems to be unaware of. Suspected to be behind the strange incidents, the 18-year-old is abruptly kicked out of the orphanage and left hungry, homeless, and wandering through the city. While starving on a riverbank, Atsushi saves a rather eccentric man named Osamu Dazai from drowning. Whimsical suicide enthusiast and supernatural detective, Dazai has been investigating the same tiger that has been terrorizing the boy. Together with Dazai's partner Doppo Kunikida, they solve the mystery, but its resolution leaves Atsushi in a tight spot. As various odd events take place, Atsushi is coerced into joining their firm of supernatural investigators, taking on unusual cases the police cannot handle, alongside his numerous enigmatic co-workers.