Haruto Kirishima lived a calm life out in the countryside, away from the fast-paced life of the city. Then Yuzuki Eba appeared in his life out of nowhere, having come from Tokyo to briefly live with her family. Their time together left him enamored with the memories of that short period before she just as abruptly disappeared from his life, and left him full of questions. Kimi no Iru Machi begins some time later, after Haruto moves to Tokyo to live with his sister, in order to pursue a career as a cook. In reality though he wishes to be with Yuzuki. Things don't start good though. When he arrives he is mistaken for a burglar and attacked by his sister's neighbour Mishima Asuka. After the misunderstanding is cleared his feelings begin to waver though. Is Eba, who keeps avoiding him for seemingly no reason, the one for him or is it Asuka?

Eighteen-year-old Dale Reki is a skilled, kind, and respected traveler, acknowledged as one of the leading adventurers in the city of Kreuz. One day while on the hunt for magical beasts, he comes across a sweet devil girl named Latina. She is alone, dressed in rags, and bears the devils' symbol of a criminal: a broken horn. Concerned for her wellbeing, Dale decides to ensure Latina's safety by bringing her to his home, eventually leading to him adopting her. Latina is sweet, innocent and compassionate, charming Dale beyond his expectations. He begins to enjoy the life of parenthood— experiencing the trials that come with raising a child and coping with the heartache he feels whenever his busy lifestyle as an adventurer parts him from her. Although work and life as a new parent become reassuring constants for Dale, the mysteries surrounding the girl remain. Why was Latina alone in the forest, and why does she harbor the symbol of a criminal? At the same time, Latina also begins to learn about the world and herself as she adjusts to her new life with Dale.

Fuutarou Uesugi is an ace high school student, but leads an otherwise tough life. His standoffish personality and reclusive nature have left him friendless, and his father is debt-ridden, forcing his family to scrape by. One day during his lunch break, Uesugi argues with a female transfer student who has claimed "his seat," leading both of them to dislike each other. That same day, he is presented with a golden opportunity to clear his family's debt: a private tutoring gig for a wealthy family's daughter, with a wage of five times the market price. He accepts the proposal, but is horrified to discover that the client, Itsuki Nakano, is the girl he confronted earlier! After unsuccessfully trying to get back on Itsuki's good side, Uesugi finds out that his problems don't end there: Itsuki is actually a quintuplet, so in addition to her, he must also tutor her sisters—Miku, Yotsuba, Nino, and Ichika—who, despite the very real threat of flunking, want nothing to do with a tutor. However, his family's livelihood is on the line so Uesugi pushes on, adamant in his resolve to rid the sisters of their detest for studying and successfully lead them to graduation.